Fiji can be downloaded from the Bitplane Customer Portal.ĭepending upon your operating system, select the appropriate link and follow the specific download instructions. If you do not have Fiji, first you have to install it. The Imaris Fiji menu allows you to use your favorite Fiji plug-ins and yet continue with your work within Imaris. ImageJ/Fiji plugins within Imaris, enhance and extend Imaris functionalities by facilitating additional image processing and offering a solution for specific problems. The second part, for Mac users, shows which steps to follow in order to connect MATLAB (or MATLAB compiler runtime) to Imaris and thus activate the available Imaris XTensions. In the first part of this “How to” section, both PC and Macintosh users can find the instructions on how to activate ImageJ/Fiji plugins within Imaris. Please note that the instructions in this tutorial are valid up to Imaris 7.6.5
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